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Analyzing NGS Data: Standard data processing and workflow analysis on high powered computing environment

The NGS technologies have the potential to dramatically accelerate biomedical research by enabling

comprehensive analysis of genomes and transcriptomes to become inexpensive, routine, and

widespread tools. This workshop will focus on methods for base‐calling and variant‐calling, for aligning

reads to reference sequences (e.g. genomes), and for de novo assembly of short reads into longer

sequences. The following tools will be covered on a shared research cluster; quality reports

of FASTQ files, trimming and filtering of reads, alignment and coverage objects such as SAM/BAM files

using bowtie/bwa, calling SNPs with Samtools, and De novo Assembly using Velvet.

Thursday, January 23, 2020
2:00pm - 5:00pm
Countway L2: Room 025
Registration has closed.

Event Organizer

Reddy Gali

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