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Analyzing NGS Data: Standard data processing and workflow analysis on high powered computing environment In-Person

The NGS technologies have the potential to dramatically accelerate biomedical research by enabling

comprehensive analysis of genomes and transcriptomes to become inexpensive, routine, and

widespread tools. This workshop will focus on methods for base‐calling and variant‐calling, for aligning

reads to reference sequences (e.g. genomes), and for de novo assembly of short reads into longer

sequences. The following tools will be covered on a shared research cluster; quality reports

of FASTQ files, trimming and filtering of reads, alignment and coverage objects such as SAM/BAM files

using bowtie/bwa, calling SNPs with Samtools, and De novo Assembly using Velvet.

Date:
Thursday, January 23, 2020
Time:
2:00pm - 5:00pm
Time Zone:
Eastern Time - US & Canada (change)
Location:
Countway L2: Room 025
Categories:
  Bioinformatics  
Registration has closed.

Event Organizer

Profile photo of Scott Lapinski
Scott Lapinski

I am available for individual consultations with the Harvard community. Please consult my calendar via the link below, and reserve a time which is most convenient for you.

Scott's Consultation Appointment Schedule

Thanks!

-Scott

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